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Framing protocol optimization in oncological Patlak parametric imaging with uKinetics



Total-body PET imaging with ultra-high sensitivity makes high-temporal-resolution framing protocols possible for the first time, which allows to capture rapid tracer dynamic changes. However, whether protocols with higher number of temporal frames can justify the efficacy with substantially added computation burden for clinical application remains unclear. We have developed a kinetic modeling software package (uKinetics) with the advantage of practical, fast, and automatic workflow for dynamic total-body studies. The aim of this work is to verify the uKinetics with PMOD and to perform framing protocol optimization for the oncological Patlak parametric imaging.


Six different protocols with 100, 61, 48, 29, 19 and 12 temporal frames were applied to analyze 60-min dynamic 18F-FDG PET scans of 10 patients, respectively. Voxel-based Patlak analysis coupled with automatically extracted image-derived input function was applied to generate parametric images. Normal tissues and lesions were segmented manually or automatically to perform correlation analysis and Bland–Altman plots. Different protocols were compared with the protocol of 100 frames as reference.


Minor differences were found between uKinetics and PMOD in the Patlak parametric imaging. Compared with the protocol with 100 frames, the relative difference of the input function and quantitative kinetic parameters remained low for protocols with at least 29 frames, but increased for the protocols with 19 and 12 frames. Significant difference of lesion Ki values was found between the protocols with 100 frames and 12 frames.


uKinetics was proved providing equivalent oncological Patlak parametric imaging comparing to PMOD. Minor differences were found between protocols with 100 and 29 frames, which indicated that 29-frame protocol is sufficient and efficient for the oncological 18F-FDG Patlak applications, and the protocols with more frames are not needed. The protocol with 19 frames yielded acceptable results, while that with 12 frames is not recommended.


In the clinical positron emission tomography (PET) scans, standardized uptake value (SUV), a semi-quantitative metric, is widely used. However, SUV is often affected by human and biological factors, e.g. time of imaging and alterations in the blood pool activity [1]. The injection-to-acquisition time deviations from the standardized protocols occur frequently, which, in particular, increases the inter-subject and intra-subject variability in SUV measurements [2, 3]. Kinetic modeling avoids many of these factors and thus offers absolute quantification in PET imaging [4]. The application of kinetic modeling, such as Ki derived from Patlak analysis, has great clinical potential by providing more specific information than SUV in the oncological diagnosis and treatment assessment [5, 6].

In recent years, in addition to research study purposes, kinetic modeling has attracted increased attention in the clinical studies with the development of total-body PET systems [7]. The long axial field of view (AFOV) brings benefits of simultaneous total-body imaging as well as the greatly improved sensitivity [8, 9]. The ultra-high sensitivity makes it possible to perform dynamic scans with a high-temporal-resolution protocol for the first time [10,11,12]. For example, 60-min dynamic data were able to be binned into 187 dynamic frames, with one second as the shortest duration of the early frames [11]. In [12], the first 120-s data were divided into 100-ms temporal frames to investigate fast tracer dynamics and to perform cardiac motion tracking. Table 1 shows a list of articles regarding kinetic modeling using the uEXPLORER systems [10, 11, 13,14,15,16,17,18,19,20,21,22,23,24], the first total-body PET/CT scanners with 194-cm AFOV (United Imaging Healthcare, Shanghai, China). There, framing protocols with a large number of temporal frames were often used to capture all the tracer dynamic changes, and the frames with short durations are applied for the early peak of the fast tracer activity changes. This practice is helpful to perform accurate estimation of the image-derived input function (IDIF); however, it also substantially increases the computation burden due to the large number of frames, and the over sampling in time may be of little use for the tissues with activity concentration gently varying over time. Although optimization of scan protocols, i.e., decreasing the whole scan duration, has been extensively investigated in the whole-body and total-body dynamic imaging [23, 25, 26], the optimization of framing protocols was rarely mentioned.

Table 1 List of articles regarding kinetic modeling using the uEXPLORER systems (2019–2022)

Most of the aforementioned uEXPLORER dynamic studies [10, 11, 13,14,15,16,17,18,19,20,21,22,23,24] used different framing protocols with different customized software, which is difficult for cross-center standardization and comparison. Therefore, it is of great interest to develop a convenient software for the large-cohort clinical studies to explore the efficacy of kinetic modeling, especially for the total-body dynamic PET imaging. A practical, fast, and automatic workflow is also required to enhance the ability to perform widespread evaluation.

To bridge the gap, we developed a software package (uKinetics, a commercial software of United Imaging Healthcare) to perform kinetic modeling on the uEXPLORER. uKinetics offers time activity curve (TAC)-based analysis and parametric imaging with multiple input function options, i.e., IDIF, population-based input function (PBIF), and user-defined input function. uKinetics supplies not only graphical analyses, e.g., Patlak, Logan, and RE plots, but also the common compartmental models, e.g., one-tissue, two-tissue, and two-tissue irreversible compartmental models, with or without time delay estimation. In addition, deep learning-based CT image segmentation was embedded to create an automated workflow.

In this study, we leverage uKinetics to evaluate the dynamic framing protocols with different number of temporal frames. Here, we focus on the 18F-FDG oncological Patlak applications. Careful verification of uKinetics is performed by comparing it to PMOD (version 4.3, PMOD Technologies Ltd., Zurich, Switzerland), a commercial software used for the biomedical image processing, analysis, and modeling. Various softwares exist for kinetic modeling and parametric imaging [7]. Among all, PMOD is one of the most widely distributed and contains all the most commonly used compartmental models for various applications. Lastly, framing recommendation for the 18F-FDG oncological Patlak studies performed on the uEXPLORER using uKinetics is offered.


Data acquisition

Ten participants underwent 0–60 min dynamic PET imaging with 0.10 ± 0.02 mCi/kg (3.53 ± 0.67 MBq/kg) 18F-FDG injection on the uEXPLORER PET/CT system at Sun Yat-sen University Cancer Center, Guangzhou, China. This study was approved by the ethics committee, and all subjects were provided informed consent for participation. Table 2 shows the diagnosis information of the participants.

Table 2 Participants’ information

Framing protocol and image reconstruction

The dynamic PET images were reconstructed using the TOF + PSF OSEM algorithm with 3 iterations and 20 subsets. A three-dimensional Gaussian filter of 3 mm in full width at half maximum (FWHM) was used for noise suppression in the reconstructed dynamic image. The corrections for randoms, attenuation, scatter, normalization, decay, and dead time were applied. Image size of 150 × 150 × 673, and the voxel size of 4 × 4 × 2.886 mm3 were used. Through visually checking the 100 reconstructed frames, only minor motion, which was mainly respiratory motion, was found during the scans, and no patient motion correction was applied.

The following protocols with different number of temporal frames were compared and were referred to as P-100f, P-61f, P-48f, P-29f, P-19f, and P-12f:

  1. a.

    P-100f (100 frames): 30 frames × 1 s, 30 × 5 s, 10 × 12 s, 5 × 60 s, 25 × 120 s.

  2. b.

    P-61f: 30 × 2 s, 6 × 10 s, 8 × 30 s, 4 × 60 s, 5 × 120 s, 8 × 300 s.

  3. c.

    P-48f: 12 × 5 s, 6 × 10 s, 8 × 30 s, 8 × 60 s, 8 × 120 s, 6 × 300 s.

  4. d.

    P-29f: 6 × 10 s, 2 × 30 s, 6 × 60 s, 5 × 120 s, 4 × 180 s, 6 × 300 s.

  5. e.

    P-19f: 6 × 10 s, 3 × 180 s, 10 × 300 s.

  6. f.

    P-12f: 6 × 10 s, 1 × 540 s, 5 × 600 s.

Kinetic modeling

A UIH software package (uKinetics) was applied to implement voxel-based kinetic modeling. Developed using C +  + programming language, uKinetics consists of three main modules: basic image display and processing including segmentation of regions of interest (ROIs), generation of input function, and ROI-based or voxel-based regression of kinetic models. In the segmentation module, descending aorta (with a user-defined radius), lung, and liver can be automatically segmented on the CT images. Threshold-based semiautomatic segmentation and manual segmentation are also supported for other ROIs on the CT or PET images. Multiple options, i.e. IDIF, PBIF, or user-defined input function, are offered in the processing of input function. In the regression module, users are able to select the time frames to be fitted, and the Levenberg–Marquardt algorithm is applied in the nonlinear fit of compartmental models. As a commercial software package, uKinetics is accessible to all the medical centers using uEXPLORER.

In this work, the input function was extracted from a cylindrical ROI with 4-mm transversal radius in the descending aorta. The centerline of the descending aorta was automatically segmented on the CT image using a deep learning network and was dilated to obtain the cylindrical ROI. No correction for partial volume effect was performed. Individual input function was generated for each framing protocol. The same input functions and dynamic images were used in PMOD. Patlak analysis (t* = 10 min [27]) according to Eq. 1 was performed for each framing protocol.

$$\frac{{C_{{\text{T}}} \left( t \right)}}{{C_{{\text{P}}} \left( t \right)}} = K_{{\text{i}}} \frac{{\int_{0}^{t} {C_{{\text{P}}} \left( \tau \right)d\tau } }}{{C_{{\text{P}}} \left( t \right)}} + {\text{intercept}}$$

where CT and CP denote the concentration of tissue and plasma, respectively. The macro kinetic parameter Ki represents the net uptake rate of tracer, and intercept represents the combination of blood volume and distribution volume of reversible compartment in an unknown fraction [28].


For the quantitative evaluation, normal tissues including lung, liver, kidney, spleen, bone, muscle, gray matter, and white matter were segmented manually or automatically. Specifically, lung, liver, spleen, bone, and kidney were segmented automatically on the CT image; gray matter and white matter were segmented semiautomatically on the PET image according to the threshold; muscle and lesions were segmented manually. Overall, 29 lesions were manually segmented from the 10 patients based on the 55–60-min PET images. In total, 109 ROIs, i.e., organs and lesions, were analyzed for each framing protocol. The average values were calculated within each ROI on the parametric images. ROI-based correlation analysis and Bland–Altman plots were performed to compare uKinetics and PMOD. Quantitative differences were also calculated between different framing protocols. PMOD is regarded as the gold standard in the verification of uKinetics, and P-100f was used as the reference protocol when comparing different protocols. The absolute and relative differences between parameter1 and parameter2 are defined as Eq. 1 and Eq. 2, respectively.

$${\text{Absolute difference = }}\left| {{\text{parameter}}_{1} - {\text{parameter}}_{2} } \right|$$
$${\text{Relative difference}} = \frac{{{\text{parameter}}_{1} - {\text{parameter}}_{2} }}{{{\text{parameter}}_{2} }}$$


Verification of parametric imaging in uKinetics

Figure 1 shows SUV images, coronal maximum intensity projection (MIP), and transverse slices of the parametric images (P-100f) generated using uKinetics and PMOD for participant 1. The difference images between uKinetics and PMOD show the absolute maximum difference value in the anterior–posterior direction (as MIP), and the slice difference images show the absolute maximum difference in the transversal direction. Increased noise was shown at the edge of the axial FOV, which was due to the sensitivity drop toward the scanner edge. The difference was higher in the bladder region than other regions, which was likely due to the fact that the kinetic model was not suitable for the bladder. Overall negligible difference was observed between the parametric images generated from uKinetics and them from PMOD.

Fig. 1
figure 1

Comparison between uKinetics and PMOD for participant 1. A SUV (55–60 min) MIP image; B Ki MIP images; C intercept MIP images; D transverse view of the lesion (arrow) SUV (55–60 min); E transverse view of the lesion Ki; and F transverse view of the lesion intercept. The parametric images were generated using uKinetics and PMOD, and absolute difference parametric images between them were also shown. The protocol of P-100f was used. Note: color scales are different for difference images from parametric images

To quantitatively evaluate the kinetic parameters yielded by uKinetics and PMOD, correlation analysis was performed across all the 654 ROIs of the 10 subjects and 6 protocols. As shown in Fig. 2, excellent consistency (R2 > 0.9999) was found between uKinetics and PMOD for both Ki and intercept values. Figure 3 shows the Bland–Altman plots between uKinetics and PMOD for the lesions of all the subjects and protocols. Average relative difference was below 0.02% for both Ki and intercept, which proved excellent consistency between uKinetics and PMOD. For the outlier (red arrow) in Fig. 3B with > 2.5% relative difference, small absolute difference of 0.0013 mL/cm3 was found.

Fig. 2
figure 2

Correlation analysis of kinetic parameters: A Ki and B intercept between uKinetics and PMOD for all the ROIs (N = 109) and all the protocols (N = 6) of all the participants (N = 10)

Fig. 3
figure 3

Bland–Altman plots of kinetic parameters: A Ki and B intercept between uKinetics and PMOD for all the lesions (N = 29) and all the protocols (N = 6) of all the participants (N = 10). An outlier was marked with an arrow

Framing protocol optimization

Given the excellent consistency in parametric images found between uKinetics and PMOD, the Patlak analysis in uKinetics is regarded as verified. Here, we evaluated different framing protocols with uKinetics. IDIFs varied across different framing protocols, as shown in Fig. 4. The input functions showed different curve shapes especially in the early time. The area under the curve (AUC) values for the 0–60 min input function were calculated, and the mean ± SD values of the AUC relative error compared to P-100f across all the 10 patients were shown. Comparing to P-100f, the difference in the AUC values was below 0.4% for P-61f, P-48f, and P-29f, which was substantially higher for P-19f (4.3% ± 1.4%) and P-12f (11.5% ± 4.1%).

Fig. 4
figure 4

A IDIFs of participant 1 with different framing protocols; B Zoom-in of the 0–5 min input functions of A; C Mean ± SD of input function AUC relative error across the 10 patients, P-100f as reference. IDIF: image-derived input function. AUC: area under curve

With the individual input function for each framing protocol, Fig. 5 shows the Ki MIP images of the participant 1 with the P-100f protocol, as well as the absolute difference images between other protocols and P-100f. Visually minor difference was observed in the Ki images between different protocols, except for the bladder region.

Fig. 5
figure 5

The Ki images of participant 1 with different temporal protocols

Table 3 shows the ROI-based quantitative Ki values for all the six protocols. Paired t-test was applied to the lesion Ki values and showed significant difference (p value < 0.05) between P-100f and P-12f. The relative difference of Ki and intercept values compared to P-100f is shown in Fig. 6. Largest average relative difference was found for Ki values with P-12f (-4.4%) and for intercept values with P-19f (-6.1%) and P-12f (-13.6%). Both Ki and intercept showed significant difference (p value < 0.001) with F-test on the variance for P-12f. Although significant difference was also observed between P-61f and P-48f in Fig. 6A, the variance of Ki relative difference was similar among all the protocols. The standard deviation was 2.4% and 4.1% for P-61f and P-48f, respectively.

Table 3 Ki values in the ROIs of difference framing protocols (mean ± SD of 10 subjects, unit: μL/min/cm3)
Fig. 6
figure 6

Mean ± SD relative difference of A Ki and B intercept values compared to P-100f (t* = 10 min) among the 10 participants. * indicates that the difference is significant (*: p value < 0.05, **: p value < 0.01, ***: p value < 0.001) with F-test

In the parametric imaging with Patlak model, 10–60 min data were used to generate Ki images. Later t* would also be used in clinical applications, because the optimized t* varies for different tissues. To evaluate the effects of t* on protocol optimization, the comparison of different framing protocols was also performed with t* = 30 min. As shown in Fig. 7, largest average relative difference was found for Ki values with P-12f (-4.7%) and for intercept values with P-19f (-3.5%) and P-12f (-7.1%).

Fig. 7
figure 7

Mean ± SD relative difference of A Ki and B intercept values compared to P-100f (t* = 30 min) among the 10 participants


With the quantitative comparison, uKinetics was proven to provide equivalent oncological FDG Patlak parametric imaging as compared to PMOD. One advantage of uKinetics is the automatic analysis procedure with the IDIF. With the user-defined radius of aorta ROI, AI-aided IDIF can be generated automatically. Since the software is available to all the medical centers using uEXPLORER, the fast and automated workflow will improve the clinical feasibility and standardization of dynamic PET, thus facilitating in the cross-center comparisons and collaborations. Besides, uKinetics is also applicable to the dynamic images acquired on other PET scanners, e.g., scanners with shorter AFOV than the uEXPLORER, when the descending aorta is within the FOV, although the robustness of the CT-based aorta segmentation is not guaranteed for CT scanners from other manufacturers.

In the optimization of framing protocols, P-29f showed similar results with P-100f, while P-12f showed significant difference. An important source of the parametric quantitative difference is the input function difference due to the sparse sampling with few temporal frames. The temporal framing protocol has a great effect on the IDIF. Interpolation of input functions to a framing protocol with dense sampling could reduce the error. If the input function was estimated by sufficient blood samples, the optimized number of frames could even be fewer. As for the P-19f, although the Ki values with P-19f did not show significant difference compared to those with P-100f as shown in Table 3, the differences of input function and intercept values were substantially high. The protocol with 19 frames may be acceptable but not recommended. It is interesting to note that P-19f yielded lower Ki difference when compared to P-100f than it with other protocols as shown in Figs. 5 and 6, which could be due to the uniform time frames used in the linear regression.

The impact of t* on the optimization of framing protocols was also evaluated. With the comparison between Fig. 6 and Fig. 7, the trend of relative difference for different protocols of t* = 30 min was consistent with that of t* = 10 min. Minor impact of t* was observed in the protocol optimization. When t* = 30 min, although the same sample points (6 × 300 s) were used for P-61f, P-48f, P-29f, and P-19f, the integral value of input function was different between P-19f and the other three protocols. Thus, P-19f showed similar Ki but different intercept, which was not recommended for the oncological Patlak analysis.

The main limitation in this work is that motion correction was not applied on the dynamic frames. Various types of motion could cause over- and under- estimation artifacts on the parametric images and mismatch between Ki and intercept images in Patlak analysis [29, 30]. Motion is more likely to occur during the total-body uEXPLORER dynamic scans, with the entire body in the entire FOV for a long scan duration [31]. A variety of studies have proved the feasibility and effectiveness of motion detection and correction algorithms for the dynamic PET studies, which can also be migrated to manage the motion effects during the dynamic total-body scans, especially the respiratory motion and inter-frame body motion [30,31,32]. Specifically, respiratory pattern variation in the time course would lead to difference in parameter estimation, which is an interesting topic for future research. The scans in this work were selected carefully, only including scans with minor motion, but small artifacts were still shown in the parametric images because of the mismatch between PET and CT. Nonetheless, the small artifacts due to motion were not expected to influence the conclusion in this paper, since the verification of uKinetics and optimization of protocols were performed for the same study population under the same condition.

Another limitation is that IDIF can only estimate the concentration in the whole blood rather than the plasma. However, the plasma-to-blood ratio is close to 1 for 18F-FDG [33, 34] and has little effect on the conclusion in this paper. Additionally, compartmental models to estimate the micro-parameters are also supported in uKinetics, and the verification and protocol optimization are going to be investigated in the future.


This study presented the validation of the proposed kinetic modeling software (uKinetics) using PMOD and the optimization of framing protocols in the oncological Patlak applications. uKinetics provided equivalent oncological FDG Patlak indirect parametric imaging as compared to PMOD. Minor differences were found between protocols with 100 and 29 frames, which indicated that 29-frame protocol is sufficient and efficient for the oncological 18F-FDG Patlak applications, and the protocols with more frames are not needed. The protocol with 19 frames yielded acceptable results, while that with 12 frames is not recommended (Additional file 1).

Availability of data and materials

The datasets used and analyzed during the current study are available from the corresponding author on reasonable request.



Positron emission tomography


Standardized uptake value


Axial field of view


Image-derived input function


Time activity curve


Population-based input function


Full width at half maximum


Region of interest


Maximum intensity projection


Area under curve


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We would like to thank Jean-Dominique Gallezot for editing the manuscript. We also would like to acknowledge the hard work of the technologists that participated in this study.


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Authors and Affiliations



QY and YL conceived the study. QY and HZ contributed equally to this paper. QY performed the quantitative evaluation and wrote the final version of the manuscript. HZ generated the input functions and the parametric images using uKinetics and PMOD. QY and YZ developed the software uKinetics. WZ and FW performed clinical acquisitions and provided clinical data. YD helped design the study and was a major contributor in writing the manuscript. YL was a main designer of the study. All authors joined in the discussions and editing the manuscript. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Yihuan Lu.

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Ethics approval and consent to participate

The study was approved by the ethics committee of Sun Yat-sen University Cancer Center, Guangzhou, China. All methods were carried out in accordance with relevant guidelines and regulations. Informed consent was contained from each patient before inclusion into the study.

Consent for publication

Consent for publication was obtained from each participant before inclusion into the study.

Competing interests

QY, HZ, YZ, YD, and YL are employees of Shanghai United Imaging Healthcare Co., Ltd., Shanghai, China. WZ and WF declare that they have no competing interests.

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Supplementary Information

Additional file 1:

Fig. S1. ROI delineation of participant 1. Fig. S2. Relative difference of kinetic parameters with the same input function applied to different framing protocols. Fig. S3. The sum squared error of Patlak parametric imaging with uKinetics. Fig. S4. Correlation analysis of kinetic parameters for all the voxels within ROIs. Fig. S5. Relative difference of kinetic parameters with the same input function and same number of frames applied to different framing protocols and Fig. S6. The interface display of uKinetics.

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Ye, Q., Zeng, H., Zhao, Y. et al. Framing protocol optimization in oncological Patlak parametric imaging with uKinetics. EJNMMI Phys 10, 54 (2023).

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  • Patlak
  • uKinetics
  • Protocol optimization
  • Total-body PET